Combining systems and synthetic biology for in vivo enzymology - Metabohub : Infrastructure nationale en métabolomique et fluxomique
Article Dans Une Revue The EMBO Journal Année : 2024

Combining systems and synthetic biology for in vivo enzymology

Sara Castaño-Cerezo
Hanna Kulyk
  • Fonction : Auteur
  • PersonId : 1180146
  • IdHAL : hanna-kulyk
Virginie Galéote
Carole Camarasa
Stéphanie Heux
Luis Garcia-Alles
Gilles Truan

Résumé

Enzymatic parameters are classically determined in vitro , under conditions that are far from those encountered in cells, casting doubt on their physiological relevance. We developed a generic approach combining tools from synthetic and systems biology to measure enzymatic parameters in vivo . In the context of a synthetic carotenoid pathway in Saccharomyces cerevisiae , we focused on a phytoene synthase and three phytoene desaturases, which are difficult to study in vitro . We designed, built, and analyzed a collection of yeast strains mimicking substantial variations in substrate concentration by strategically manipulating the expression of geranyl-geranyl pyrophosphate (GGPP) synthase. We successfully determined in vivo Michaelis-Menten parameters ( K M , V max and k cat ) for GGPP-converting phytoene synthase from absolute metabolomics, fluxomics and proteomics data, highlighting differences between in vivo and in vitro parameters. Leveraging the versatility of the same set of strains, we then extracted enzymatic parameters for two of the three phytoene desaturases. Our approach demonstrates the feasibility of assessing enzymatic parameters directly in vivo , providing a novel perspective on the kinetic characteristics of enzymes in real cellular conditions.
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hal-04688552 , version 1 (06-09-2024)

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Sara Castaño-Cerezo, Alexandre Chamas, Hanna Kulyk, Christian Treitz, Floriant Bellvert, et al.. Combining systems and synthetic biology for in vivo enzymology. The EMBO Journal, inPress, ⟨10.1101/2024.02.02.578620⟩. ⟨hal-04688552⟩
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