<?xml version="1.0" encoding="utf-8"?>
<TEI xmlns="http://www.tei-c.org/ns/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:hal="http://hal.archives-ouvertes.fr/" xmlns:gml="http://www.opengis.net/gml/3.3/" xmlns:gmlce="http://www.opengis.net/gml/3.3/ce" version="1.1" xsi:schemaLocation="http://www.tei-c.org/ns/1.0 http://api.archives-ouvertes.fr/documents/aofr-sword.xsd">
  <teiHeader>
    <fileDesc>
      <titleStmt>
        <title>HAL TEI export of bioemco-00168822</title>
      </titleStmt>
      <publicationStmt>
        <distributor>CCSD</distributor>
        <availability status="restricted">
          <licence target="https://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 - Universal</licence>
        </availability>
        <date when="2026-05-03T04:08:37+02:00"/>
      </publicationStmt>
      <sourceDesc>
        <p part="N">HAL API Platform</p>
      </sourceDesc>
    </fileDesc>
  </teiHeader>
  <text>
    <body>
      <listBibl>
        <biblFull>
          <titleStmt>
            <title xml:lang="en">Links between plant and rhizoplane bacterial communities in grassland soils characterized using molecular techniques</title>
            <author role="aut">
              <persName>
                <forename type="first">Naoise</forename>
                <surname>Nunan</surname>
              </persName>
              <email type="md5">53ec2bf8fc3c0a6857a3e607c42fa39c</email>
              <email type="domain">upmc.fr</email>
              <idno type="idhal" notation="string">nunan-naoise</idno>
              <idno type="idhal" notation="numeric">736325</idno>
              <idno type="halauthorid" notation="string">41478-736325</idno>
              <idno type="ORCID">https://orcid.org/0000-0003-3448-7171</idno>
              <idno type="IDREF">https://www.idref.fr/179822659</idno>
              <affiliation ref="#struct-31573"/>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Tim</forename>
                <forename type="middle">J.</forename>
                <surname>Daniell</surname>
              </persName>
              <idno type="halauthorid">198098-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Brajesh</forename>
                <forename type="middle">K.</forename>
                <surname>Singh</surname>
              </persName>
              <idno type="halauthorid">198142-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">Artemis</forename>
                <surname>Papert</surname>
              </persName>
              <idno type="halauthorid">198145-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">James</forename>
                <forename type="middle">W.</forename>
                <surname>Mcnicol</surname>
              </persName>
              <idno type="halauthorid">198078-0</idno>
            </author>
            <author role="aut">
              <persName>
                <forename type="first">James</forename>
                <forename type="middle">I.</forename>
                <surname>Prosser</surname>
              </persName>
              <idno type="halauthorid">212480-0</idno>
            </author>
            <editor role="depositor">
              <persName>
                <forename>Nunan</forename>
                <surname>Naoise</surname>
              </persName>
              <email type="md5">157c7578f59fda2c94e28b0a2ef67f47</email>
              <email type="domain">cnrs.fr</email>
            </editor>
          </titleStmt>
          <editionStmt>
            <edition n="v1" type="current">
              <date type="whenSubmitted">2007-08-30 13:46:17</date>
              <date type="whenModified">2025-03-28 17:38:08</date>
              <date type="whenReleased">2007-08-30 13:46:17</date>
              <date type="whenProduced">2005-11-01</date>
              <ref type="externalLink" target="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1287736"/>
              <fs>
                <f name="inra_publicVise_local" notation="string" n="SC">
                  <string>inra_publicVise_local_SC</string>
                </f>
              </fs>
            </edition>
            <respStmt>
              <resp>contributor</resp>
              <name key="535427">
                <persName>
                  <forename>Nunan</forename>
                  <surname>Naoise</surname>
                </persName>
                <email type="md5">157c7578f59fda2c94e28b0a2ef67f47</email>
                <email type="domain">cnrs.fr</email>
              </name>
            </respStmt>
          </editionStmt>
          <publicationStmt>
            <distributor>CCSD</distributor>
            <idno type="halId">bioemco-00168822</idno>
            <idno type="halUri">https://hal-bioemco.ccsd.cnrs.fr/bioemco-00168822</idno>
            <idno type="halBibtex">nunan:bioemco-00168822</idno>
            <idno type="halRefHtml">&lt;i&gt;Applied and Environmental Microbiology&lt;/i&gt;, 2005, 71 (11), pp.6784-6792. &lt;a target="_blank" href="https://dx.doi.org/10.1128/AEM.71.11.6784-6792.2005"&gt;&amp;#x27E8;10.1128/AEM.71.11.6784-6792.2005&amp;#x27E9;&lt;/a&gt;</idno>
            <idno type="halRef">Applied and Environmental Microbiology, 2005, 71 (11), pp.6784-6792. &amp;#x27E8;10.1128/AEM.71.11.6784-6792.2005&amp;#x27E9;</idno>
            <availability status="restricted"/>
          </publicationStmt>
          <seriesStmt>
            <idno type="stamp" n="BIOEMCO" corresp="ENS-PARIS">Laboratoire Biogéochimie et écologie des milieux continentaux</idno>
            <idno type="stamp" n="ENS-PARIS">Ecole Normale Supérieure de Paris</idno>
            <idno type="stamp" n="AGROPARISTECH">AgroParisTech</idno>
            <idno type="stamp" n="UPMC" corresp="SORBONNE-UNIVERSITE">Université Pierre et Marie Curie</idno>
            <idno type="stamp" n="CNRS">CNRS - Centre national de la recherche scientifique</idno>
            <idno type="stamp" n="INRA">INRA - Institut national de la recherche agronomique</idno>
            <idno type="stamp" n="GIP-BE">GIP Bretagne Environnement</idno>
            <idno type="stamp" n="PSL">Université Paris sciences et lettres</idno>
            <idno type="stamp" n="AGREENIUM">Archive ouverte en agrobiosciences</idno>
            <idno type="stamp" n="SORBONNE-UNIVERSITE">Sorbonne Université</idno>
            <idno type="stamp" n="INRAE">Institut National de Recherche en Agriculture, Alimentation et Environnement</idno>
            <idno type="stamp" n="ENS-PSL" corresp="PSL">École normale supérieure - PSL</idno>
            <idno type="stamp" n="SU-TI">Sorbonne Université - Texte Intégral</idno>
            <idno type="stamp" n="ALLIANCE-SU"> Alliance Sorbonne Université</idno>
          </seriesStmt>
          <notesStmt>
            <note type="audience" n="2">International</note>
            <note type="popular" n="0">No</note>
            <note type="peer" n="1">Yes</note>
          </notesStmt>
          <sourceDesc>
            <biblStruct>
              <analytic>
                <title xml:lang="en">Links between plant and rhizoplane bacterial communities in grassland soils characterized using molecular techniques</title>
                <author role="aut">
                  <persName>
                    <forename type="first">Naoise</forename>
                    <surname>Nunan</surname>
                  </persName>
                  <email type="md5">53ec2bf8fc3c0a6857a3e607c42fa39c</email>
                  <email type="domain">upmc.fr</email>
                  <idno type="idhal" notation="string">nunan-naoise</idno>
                  <idno type="idhal" notation="numeric">736325</idno>
                  <idno type="halauthorid" notation="string">41478-736325</idno>
                  <idno type="ORCID">https://orcid.org/0000-0003-3448-7171</idno>
                  <idno type="IDREF">https://www.idref.fr/179822659</idno>
                  <affiliation ref="#struct-31573"/>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Tim</forename>
                    <forename type="middle">J.</forename>
                    <surname>Daniell</surname>
                  </persName>
                  <idno type="halauthorid">198098-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Brajesh</forename>
                    <forename type="middle">K.</forename>
                    <surname>Singh</surname>
                  </persName>
                  <idno type="halauthorid">198142-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">Artemis</forename>
                    <surname>Papert</surname>
                  </persName>
                  <idno type="halauthorid">198145-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">James</forename>
                    <forename type="middle">W.</forename>
                    <surname>Mcnicol</surname>
                  </persName>
                  <idno type="halauthorid">198078-0</idno>
                </author>
                <author role="aut">
                  <persName>
                    <forename type="first">James</forename>
                    <forename type="middle">I.</forename>
                    <surname>Prosser</surname>
                  </persName>
                  <idno type="halauthorid">212480-0</idno>
                </author>
              </analytic>
              <monogr>
                <idno type="halJournalId" status="VALID">3064</idno>
                <idno type="issn">0099-2240</idno>
                <idno type="eissn">1098-5336</idno>
                <title level="j">Applied and Environmental Microbiology</title>
                <imprint>
                  <publisher>American Society for Microbiology</publisher>
                  <biblScope unit="volume">71</biblScope>
                  <biblScope unit="issue">11</biblScope>
                  <biblScope unit="pp">6784-6792</biblScope>
                  <date type="datePub">2005-11-01</date>
                </imprint>
              </monogr>
              <idno type="doi">10.1128/AEM.71.11.6784-6792.2005</idno>
              <idno type="prodinra">251440</idno>
              <idno type="pubmedcentral">PMC1287736</idno>
            </biblStruct>
          </sourceDesc>
          <profileDesc>
            <langUsage>
              <language ident="en">English</language>
            </langUsage>
            <textClass>
              <classCode scheme="halDomain" n="sdv.ee">Life Sciences [q-bio]/Ecology, environment</classCode>
              <classCode scheme="halTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halOldTypology" n="ART">Journal articles</classCode>
              <classCode scheme="halTreeTypology" n="ART">Journal articles</classCode>
              <classCode scheme="https://namespace.ccsd.cnrs.fr/hal/metadata/bioemco_team" n="1">Matières organiques des sols : dynamique et fonctions</classCode>
            </textClass>
            <abstract xml:lang="en">
              <p>Molecular analysis of grassland rhizosphere soil has demonstrated complex and diverse bacterial communities, with resultant difficulties in detecting links between plant and bacterial communities. These studies have, however, analyzed “bulk” rhizosphere soil, rather than rhizoplane communities, which interact most closely with plants through utilization of root exudates. The aim of this study was to test the hypothesis that plant species was a major driver for bacterial rhizoplane community composition on individual plant roots. DNA extracted from individual roots was used to determine plant identity, by analysis of the plastid tRNA leucine (trnL) UAA gene intron, and plant-related bacterial communities. Bacterial communities were characterized by analysis of PCR-amplified 16S rRNA genes using two fingerprinting methods: terminal restriction fragment length polymorphisms (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Links between plant and bacterial rhizoplane communities could not be detected by visual examination of T-RFLP patterns or DGGE banding profiles. Statistical analysis of fingerprint patterns did not reveal a relationship between bacterial community composition and plant species but did demonstrate an influence of plant community composition. The data also indicated that topography and other, uncharacterized, environmental factors are important in driving bacterial community composition in grassland soils. T-RFLP had greater potential resolving power than DGGE, but findings from the two methods were not significantly different.</p>
            </abstract>
          </profileDesc>
        </biblFull>
      </listBibl>
    </body>
    <back>
      <listOrg type="structures">
        <org type="laboratory" xml:id="struct-31573" status="OLD">
          <idno type="IdRef">151233993</idno>
          <idno type="ISNI">0000000403700635</idno>
          <idno type="RNSR">200117836M</idno>
          <orgName>Biogéochimie et écologie des milieux continentaux</orgName>
          <orgName type="acronym">Bioemco</orgName>
          <date type="start">2009-01-01</date>
          <date type="end">2014-01-01</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.biologie.ens.fr/bioemco/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-59704" type="direct"/>
            <relation active="#struct-564132" type="indirect"/>
            <relation active="#struct-67872" type="direct"/>
            <relation name="UMR1122" active="#struct-92114" type="direct"/>
            <relation active="#struct-93591" type="direct"/>
            <relation active="#struct-148117" type="direct"/>
            <relation name="UMR7618" active="#struct-441569" type="direct"/>
          </listRelation>
        </org>
        <org type="institution" xml:id="struct-59704" status="VALID">
          <idno type="IdRef">031738419</idno>
          <idno type="ISNI">0000000123532622</idno>
          <idno type="ROR">https://ror.org/05a0dhs15</idno>
          <orgName>École normale supérieure - Paris</orgName>
          <orgName type="acronym">ENS-PSL</orgName>
          <date type="start">1985-07-24</date>
          <desc>
            <address>
              <addrLine>45, Rue d'Ulm - 75230 Paris cedex 05</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.ens.psl.eu/</ref>
          </desc>
          <listRelation>
            <relation active="#struct-564132" type="direct"/>
          </listRelation>
        </org>
        <org type="regroupinstitution" xml:id="struct-564132" status="VALID">
          <idno type="IdRef">241597595</idno>
          <idno type="ISNI">0000 0004 1784 3645</idno>
          <idno type="ROR">https://ror.org/013cjyk83</idno>
          <orgName>Université Paris Sciences et Lettres</orgName>
          <orgName type="acronym">PSL</orgName>
          <desc>
            <address>
              <addrLine>60 rue Mazarine 75006 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.psl.eu/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-67872" status="VALID">
          <idno type="IdRef">050165224</idno>
          <idno type="ROR">https://ror.org/05q3vnk25</idno>
          <orgName>Institut de Recherche pour le Développement</orgName>
          <orgName type="acronym">IRD</orgName>
          <desc>
            <address>
              <addrLine>SiègeLe Sextant 44, bd de DunkerqueCS 9000913572 Marseille cedex 02</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.ird.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-92114" status="OLD">
          <idno type="ROR">https://ror.org/01x3gbx83</idno>
          <orgName>Institut National de la Recherche Agronomique</orgName>
          <orgName type="acronym">INRA</orgName>
          <date type="start">1946-05-18</date>
          <date type="end">2019-12-31</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.inra.fr</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-93591" status="OLD">
          <idno type="ROR">https://ror.org/02en5vm52</idno>
          <orgName>Université Pierre et Marie Curie - Paris 6</orgName>
          <orgName type="acronym">UPMC</orgName>
          <date type="end">2017-12-31</date>
          <desc>
            <address>
              <addrLine>4 place Jussieu - 75005 Paris</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">http://www.upmc.fr/</ref>
          </desc>
        </org>
        <org type="institution" xml:id="struct-148117" status="VALID">
          <idno type="IdRef">139408088</idno>
          <idno type="ROR">https://ror.org/02kbmgc12</idno>
          <orgName>AgroParisTech</orgName>
          <date type="start">2007-01-01</date>
          <desc>
            <address>
              <addrLine>22 place de l'Agronomie CS 20040 91123 Palaiseau cedex</addrLine>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.agroparistech.fr/</ref>
          </desc>
        </org>
        <org type="regroupinstitution" xml:id="struct-441569" status="VALID">
          <idno type="IdRef">02636817X</idno>
          <idno type="ISNI">0000000122597504</idno>
          <idno type="ROR">https://ror.org/02feahw73</idno>
          <orgName>Centre National de la Recherche Scientifique</orgName>
          <orgName type="acronym">CNRS</orgName>
          <date type="start">1939-10-19</date>
          <desc>
            <address>
              <country key="FR"/>
            </address>
            <ref type="url">https://www.cnrs.fr/</ref>
          </desc>
        </org>
      </listOrg>
    </back>
  </text>
</TEI>